PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000121.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 674aa    MW: 78021.1 Da    PI: 8.1899
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000121.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.11.2e-2267150189
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              ++Yn YA+e+GF+vr+++s  ++++ge + + ++Cs +g+++ ++ +     r+r+etrtgC a++++++ ++++w+v ++ leHn
  Itr_sc000121.1_g00015.1  67 NYYNCYAREAGFRVRVKNSWFKRNSGEKYGAVLCCSSQGFKRIKDVN-----RSRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHN 147
                              69*****************************************9988.....99******************************** PP

                     FAR1  87 Hel 89 
                              H l
  Itr_sc000121.1_g00015.1 148 HVL 150
                              *87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-2067150IPR004330FAR1 DNA binding domain
PfamPF105511.4E-27269362IPR018289MULE transposase domain
PROSITE profilePS509669.73556592IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MVLQMEEVSP DSKHAIVGQN NEILRDTDGQ QIESCGIDGQ NGIPEVQKEF VAPAVGMEFE  60
SYDDAYNYYN CYAREAGFRV RVKNSWFKRN SGEKYGAVLC CSSQGFKRIK DVNRSRKETR  120
TGCPAMIRMR LVDSKRWRVL EVTLEHNHVL GAKLYKSMKK ISSGAKRKLE ANSNTEVQTI  180
KLYRALVIDT GGNGSTNSGA REARGSTDYS GHLNLRKGDT QAMYNYFCRM QLTNPNFFYM  240
MDLNDEGHLR NVFWVDARSR AACCYFSDVI YFDNTYLLNK FEIPLVAFVG INHHGQSVLL  300
GCGLLAGETM DSYIWVFKAW LTCTSGQIPQ TIITDRCKTL QSAVAEMFPR SVHCYDLSHI  360
MRKVPEKLGG LRNYDSIRKA FTKTIYETLK PIDFEAAWGF MIQRFEVGDH EWLRSLYDDR  420
SRWAPVYLKD TFFAGMATAR PTETLTAFFD RYLHKQTPLK EFLDKYELAL QKKHKEESIA  480
DMESRSSTHE LKTRCSFELQ LSKVYTREIF KKFQLEVEEM YSCFSTTQLH VDGPIIIFLV  540
KERVLGEWNR REIRDYEVLY NRAAVEVRCI CSCFNFYGYL CRHALCVLNF NGVEEIPSKY  600
ILPRWKKDYK RLCVPDPGSN PVNGTEQVQW FNQLYRSALQ VVEEGVISLD HYKAALQAFE  660
ESLSRVHSIE EKHK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263979.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLF6HXG30.0F6HXG3_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g07400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6